Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii.
Identifieur interne : 000B89 ( Main/Exploration ); précédent : 000B88; suivant : 000B90Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii.
Auteurs : M Catherine Aime [États-Unis] ; Hector Urbina [États-Unis] ; Julian A. Liber [États-Unis] ; Gregory Bonito [États-Unis] ; Ryoko Oono [États-Unis]Source :
- Mycologia [ 1557-2536 ]
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN fongique (génétique), ARN ribosomique 18S (génétique), ARN ribosomique 28S (génétique), ARN ribosomique 5.8S (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Animaux (MeSH), Basidiomycota (classification), Basidiomycota (cytologie), Basidiomycota (génétique), Basidiomycota (isolement et purification), Endophytes (classification), Endophytes (génétique), Endophytes (isolement et purification), Espaceur de l'ADN ribosomique (composition chimique), Espaceur de l'ADN ribosomique (génétique), Feuilles de plante (microbiologie), Gènes d'ARN ribosomique (MeSH), Microscopie (MeSH), Phylogenèse (MeSH), Pinus taeda (microbiologie), Populus (microbiologie), Racines de plante (microbiologie), Techniques microbiologiques (MeSH).
- MESH :
- composition chimique : ADN fongique, ADN ribosomique, Basidiomycota, Endophytes, Espaceur de l'ADN ribosomique.
- cytologie : Basidiomycota.
- génétique : ADN fongique, ADN ribosomique, ARN fongique, ARN ribosomique 18S, ARN ribosomique 28S, ARN ribosomique 5.8S, Basidiomycota, Endophytes, Espaceur de l'ADN ribosomique.
- isolement et purification : Basidiomycota, Endophytes.
- microbiologie : Feuilles de plante, Pinus taeda, Populus, Racines de plante.
- Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Gènes d'ARN ribosomique, Microscopie, Phylogenèse, Techniques microbiologiques.
English descriptors
- KwdEn :
- Animals (MeSH), Basidiomycota (classification), Basidiomycota (cytology), Basidiomycota (genetics), Basidiomycota (isolation & purification), Cluster Analysis (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Endophytes (classification), Endophytes (genetics), Endophytes (isolation & purification), Genes, rRNA (MeSH), Microbiological Techniques (MeSH), Microscopy (MeSH), Phylogeny (MeSH), Pinus taeda (microbiology), Plant Leaves (microbiology), Plant Roots (microbiology), Populus (microbiology), RNA, Fungal (genetics), RNA, Ribosomal, 18S (genetics), RNA, Ribosomal, 28S (genetics), RNA, Ribosomal, 5.8S (genetics), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer.
- classification : Basidiomycota, Endophytes.
- cytology : Basidiomycota.
- genetics : Basidiomycota, DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer, Endophytes, RNA, Fungal, RNA, Ribosomal, 18S, RNA, Ribosomal, 28S, RNA, Ribosomal, 5.8S.
- isolation & purification : Basidiomycota, Endophytes.
- microbiology : Pinus taeda, Plant Leaves, Plant Roots, Populus.
- Animals, Cluster Analysis, Genes, rRNA, Microbiological Techniques, Microscopy, Phylogeny, Sequence Analysis, DNA.
Abstract
Sterile fungal isolates are often recovered in leaf and root endophytic studies, although these seldom play a significant role in downstream analyses. The authors sought to identify and characterize two such endophytes-one representing the most commonly recovered fungal isolate in recent studies of needle endophytes of Pinus taeda and the other representing a rarely isolated root endophyte of Populus trichocarpa. Both are shown by DNA sequencing to be undescribed species of Atractiellomycetes (Pucciniomycotina, Basidiomycota), a poorly characterized class of mostly plant-associated and presumably saprobic microfungi. The authors describe the new genus and species Atractidochium hillariae (Phleogenaceae) and the new species Proceropycnis hameedii (Hoehnelomycetaceae), both in the Atractiellales, to accommodate these unusual isolates. Following incubations of 1-2 mo, A. hillariae produces minute white sporodochia, similar to those produced by several other members of Atractiellales, whereas Pr. hameedii forms conidia singly or in chains in a manner similar to its sister species Pr. pinicola. Additionally, we provide a taxonomic revision of Atractiellomycetes based on multilocus analyses and propose the new genera Neogloea (Helicogloeaceae) and Bourdotigloea (Phleogenaceae) to accommodate ex-Helicogloea species that are not congeneric with the type H. lagerheimii. Atractiellomycetes consists of a single order, Atractiellales, and three families, Hoehnelomycetaceae, Phleogenaceae, and Helicogloeaceae. Accumulated evidence suggests that Atractiellomycetes species are common but infrequently isolated members of plant foliar and root endobiomes.
DOI: 10.1080/00275514.2018.1446650
PubMed: 29863992
Affiliations:
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(MeSH)</term><term>Pinus taeda (microbiologie)</term><term>Populus (microbiologie)</term><term>Racines de plante (microbiologie)</term><term>Techniques microbiologiques (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN fongique</term><term>ADN ribosomique</term><term>Basidiomycota</term><term>Endophytes</term><term>Espaceur de l'ADN ribosomique</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" 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taeda</term><term>Populus</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Pinus taeda</term><term>Plant Leaves</term><term>Plant Roots</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Cluster Analysis</term><term>Genes, rRNA</term><term>Microbiological Techniques</term><term>Microscopy</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Gènes d'ARN ribosomique</term><term>Microscopie</term><term>Phylogenèse</term><term>Techniques microbiologiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Sterile fungal isolates are often recovered in leaf and root endophytic studies, although these seldom play a significant role in downstream analyses. The authors sought to identify and characterize two such endophytes-one representing the most commonly recovered fungal isolate in recent studies of needle endophytes of Pinus taeda and the other representing a rarely isolated root endophyte of Populus trichocarpa. Both are shown by DNA sequencing to be undescribed species of Atractiellomycetes (Pucciniomycotina, Basidiomycota), a poorly characterized class of mostly plant-associated and presumably saprobic microfungi. The authors describe the new genus and species Atractidochium hillariae (Phleogenaceae) and the new species Proceropycnis hameedii (Hoehnelomycetaceae), both in the Atractiellales, to accommodate these unusual isolates. Following incubations of 1-2 mo, A. hillariae produces minute white sporodochia, similar to those produced by several other members of Atractiellales, whereas Pr. hameedii forms conidia singly or in chains in a manner similar to its sister species Pr. pinicola. Additionally, we provide a taxonomic revision of Atractiellomycetes based on multilocus analyses and propose the new genera Neogloea (Helicogloeaceae) and Bourdotigloea (Phleogenaceae) to accommodate ex-Helicogloea species that are not congeneric with the type H. lagerheimii. Atractiellomycetes consists of a single order, Atractiellales, and three families, Hoehnelomycetaceae, Phleogenaceae, and Helicogloeaceae. Accumulated evidence suggests that Atractiellomycetes species are common but infrequently isolated members of plant foliar and root endobiomes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29863992</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>11</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>11</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1557-2536</ISSN><JournalIssue CitedMedium="Internet"><Volume>110</Volume><Issue>1</Issue><PubDate><MedlineDate>2018 Jan-Feb</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii.</ArticleTitle><Pagination><MedlinePgn>136-146</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1080/00275514.2018.1446650</ELocationID><Abstract><AbstractText>Sterile fungal isolates are often recovered in leaf and root endophytic studies, although these seldom play a significant role in downstream analyses. The authors sought to identify and characterize two such endophytes-one representing the most commonly recovered fungal isolate in recent studies of needle endophytes of Pinus taeda and the other representing a rarely isolated root endophyte of Populus trichocarpa. Both are shown by DNA sequencing to be undescribed species of Atractiellomycetes (Pucciniomycotina, Basidiomycota), a poorly characterized class of mostly plant-associated and presumably saprobic microfungi. The authors describe the new genus and species Atractidochium hillariae (Phleogenaceae) and the new species Proceropycnis hameedii (Hoehnelomycetaceae), both in the Atractiellales, to accommodate these unusual isolates. Following incubations of 1-2 mo, A. hillariae produces minute white sporodochia, similar to those produced by several other members of Atractiellales, whereas Pr. hameedii forms conidia singly or in chains in a manner similar to its sister species Pr. pinicola. Additionally, we provide a taxonomic revision of Atractiellomycetes based on multilocus analyses and propose the new genera Neogloea (Helicogloeaceae) and Bourdotigloea (Phleogenaceae) to accommodate ex-Helicogloea species that are not congeneric with the type H. lagerheimii. Atractiellomycetes consists of a single order, Atractiellales, and three families, Hoehnelomycetaceae, Phleogenaceae, and Helicogloeaceae. Accumulated evidence suggests that Atractiellomycetes species are common but infrequently isolated members of plant foliar and root endobiomes.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Aime</LastName><ForeName>M Catherine</ForeName><Initials>MC</Initials><Identifier Source="ORCID">0000-0001-8742-6685</Identifier><AffiliationInfo><Affiliation>a Department of Botany and Plant Pathology , Purdue University , West Lafayette , Indiana 47907.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Urbina</LastName><ForeName>Hector</ForeName><Initials>H</Initials><Identifier Source="ORCID">0000-0002-5570-4537</Identifier><AffiliationInfo><Affiliation>a Department of Botany and Plant Pathology , Purdue University , West Lafayette , Indiana 47907.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liber</LastName><ForeName>Julian A</ForeName><Initials>JA</Initials><Identifier Source="ORCID">0000-0002-9941-8268</Identifier><AffiliationInfo><Affiliation>b Department of Plant, Soil and Microbial Sciences , Michigan State University , East Lansing , Michigan 48824.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bonito</LastName><ForeName>Gregory</ForeName><Initials>G</Initials><Identifier Source="ORCID">0000-0002-7262-8978</Identifier><AffiliationInfo><Affiliation>b Department of Plant, Soil and Microbial Sciences , Michigan State University , East Lansing , Michigan 48824.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oono</LastName><ForeName>Ryoko</ForeName><Initials>R</Initials><Identifier Source="ORCID">0000-0003-4859-0030</Identifier><AffiliationInfo><Affiliation>c Department of Ecology, Evolution, and Marine Biology , University of California-Santa Barbara , Santa Barbara , California 93106.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012331">RNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012337">RNA, Ribosomal, 18S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012339">RNA, Ribosomal, 28S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012340">RNA, Ribosomal, 5.8S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000166" MajorTopicYN="N">cytology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060026" MajorTopicYN="N">Endophytes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008828" MajorTopicYN="N">Microbiological Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008853" MajorTopicYN="N">Microscopy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D041603" MajorTopicYN="N">Pinus taeda</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012331" MajorTopicYN="N">RNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012337" MajorTopicYN="N">RNA, Ribosomal, 18S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012339" MajorTopicYN="N">RNA, Ribosomal, 28S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012340" MajorTopicYN="N">RNA, Ribosomal, 5.8S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">7 new taxa</Keyword><Keyword MajorTopicYN="Y">Atractiella</Keyword><Keyword MajorTopicYN="Y">Helicogloeaceae</Keyword><Keyword MajorTopicYN="Y">Hobsonia</Keyword><Keyword MajorTopicYN="Y">Leucogloea</Keyword><Keyword MajorTopicYN="Y">Phleogena</Keyword><Keyword MajorTopicYN="Y">Saccoblastia</Keyword><Keyword MajorTopicYN="Y">orchid mycorrhizae</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>6</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29863992</ArticleId><ArticleId IdType="doi">10.1080/00275514.2018.1446650</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li><li>Indiana</li><li>Michigan</li></region></list><tree><country name="États-Unis"><region name="Indiana"><name sortKey="Aime, M Catherine" sort="Aime, M Catherine" uniqKey="Aime M" first="M Catherine" last="Aime">M Catherine Aime</name></region><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><name sortKey="Liber, Julian A" sort="Liber, Julian A" uniqKey="Liber J" first="Julian A" last="Liber">Julian A. Liber</name><name sortKey="Oono, Ryoko" sort="Oono, Ryoko" uniqKey="Oono R" first="Ryoko" last="Oono">Ryoko Oono</name><name sortKey="Urbina, Hector" sort="Urbina, Hector" uniqKey="Urbina H" first="Hector" last="Urbina">Hector Urbina</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|wiki= Bois
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|texte= Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii.
}}
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